BamQC report ----------------------------------- >>>>>>> Input bam file = SRR10524850.sorted.bam outfile = /home/luna/rawdata/yangyxdownload/SRP215441/SRP215441.result/quality.files/genome_results.txt >>>>>>> Reference number of bases = 3,095,693,983 bp number of contigs = 25 >>>>>>> Globals number of windows = 424 number of reads = 10,104 number of mapped reads = 6,655 (65.87%) number of supplementary alignments = 30 (0.3%) number of secondary alignments = 0 number of mapped bases = 380,157 bp number of sequenced bases = 380,008 bp number of aligned bases = 0 bp number of duplicated reads (estimated) = 215 duplication rate = 3.06% >>>>>>> Insert size mean insert size = 0 std insert size = 0 median insert size = 0 >>>>>>> Mapping quality mean mapping quality = 44.6063 >>>>>>> ACTG content number of A's = 94,650 bp (24.91%) number of C's = 69,734 bp (18.35%) number of T's = 123,791 bp (32.58%) number of G's = 91,821 bp (24.16%) number of N's = 12 bp (0%) GC percentage = 42.51% >>>>>>> Mismatches and indels general error rate = 0.0052 number of mismatches = 1,930 number of insertions = 31 mapped reads with insertion percentage = 0.47% number of deletions = 85 mapped reads with deletion percentage = 1.26% homopolymer indels = 45.69% >>>>>>> Coverage mean coverageData = 0.0001X std coverageData = 0.012X There is a 0.01% of reference with a coverageData >= 1X There is a 0% of reference with a coverageData >= 2X There is a 0% of reference with a coverageData >= 3X There is a 0% of reference with a coverageData >= 4X There is a 0% of reference with a coverageData >= 5X There is a 0% of reference with a coverageData >= 6X There is a 0% of reference with a coverageData >= 7X There is a 0% of reference with a coverageData >= 8X There is a 0% of reference with a coverageData >= 9X There is a 0% of reference with a coverageData >= 10X There is a 0% of reference with a coverageData >= 11X There is a 0% of reference with a coverageData >= 12X There is a 0% of reference with a coverageData >= 13X There is a 0% of reference with a coverageData >= 14X There is a 0% of reference with a coverageData >= 15X There is a 0% of reference with a coverageData >= 16X There is a 0% of reference with a coverageData >= 17X There is a 0% of reference with a coverageData >= 18X There is a 0% of reference with a coverageData >= 19X There is a 0% of reference with a coverageData >= 20X There is a 0% of reference with a coverageData >= 21X There is a 0% of reference with a coverageData >= 22X There is a 0% of reference with a coverageData >= 23X There is a 0% of reference with a coverageData >= 24X There is a 0% of reference with a coverageData >= 25X There is a 0% of reference with a coverageData >= 26X There is a 0% of reference with a coverageData >= 27X There is a 0% of reference with a coverageData >= 28X There is a 0% of reference with a coverageData >= 29X There is a 0% of reference with a coverageData >= 30X There is a 0% of reference with a coverageData >= 31X There is a 0% of reference with a coverageData >= 32X There is a 0% of reference with a coverageData >= 33X There is a 0% of reference with a coverageData >= 34X There is a 0% of reference with a coverageData >= 35X There is a 0% of reference with a coverageData >= 36X There is a 0% of reference with a coverageData >= 37X There is a 0% of reference with a coverageData >= 38X There is a 0% of reference with a coverageData >= 39X There is a 0% of reference with a coverageData >= 40X There is a 0% of reference with a coverageData >= 41X There is a 0% of reference with a coverageData >= 42X There is a 0% of reference with a coverageData >= 43X There is a 0% of reference with a coverageData >= 44X There is a 0% of reference with a coverageData >= 45X There is a 0% of reference with a coverageData >= 46X There is a 0% of reference with a coverageData >= 47X There is a 0% of reference with a coverageData >= 48X There is a 0% of reference with a coverageData >= 49X There is a 0% of reference with a coverageData >= 50X There is a 0% of reference with a coverageData >= 51X >>>>>>> Coverage per contig chr1 249250621 32181 1.2911101232522103E-4 0.012477744296674314 chr2 243199373 23676 9.735222467041476E-5 0.010611013679361805 chr3 198022430 24669 1.2457679667904288E-4 0.012051797288562377 chr4 191154276 24033 1.257256730160721E-4 0.011902115371744298 chr5 180915260 20272 1.1205246036182907E-4 0.011340687866811076 chr6 171115067 23526 1.3748643186400412E-4 0.012439082612657129 chr7 159138663 19977 1.2553203365796783E-4 0.011768011847585495 chr8 146364022 17232 1.177338512875794E-4 0.011462608790092945 chr9 141213431 16203 1.1474121041645111E-4 0.011354888771380616 chr10 135534747 20973 1.5474260633695653E-4 0.013211225708002691 chr11 135006516 18033 1.3357133073488097E-4 0.012348518813120605 chr12 133851895 18608 1.390193243061669E-4 0.012741534597091162 chr13 115169878 13414 1.1647142666939353E-4 0.011826895138018182 chr14 107349540 10576 9.8519285690465E-5 0.01443229535210773 chr15 102531392 8399 8.191637542578179E-5 0.00964511349568373 chr16 90354753 13780 1.5250996259156394E-4 0.013351098274869229 chr17 81195210 9927 1.2226090677023928E-4 0.01194015799378601 chr18 78077248 12434 1.5925253922884167E-4 0.013446500396510332 chr19 59128983 9062 1.532581745909616E-4 0.013326224399116854 chr20 63025520 8176 1.2972522876447508E-4 0.01249441555662982 chr21 48129895 4510 9.370475460210333E-5 0.010370839338473565 chr22 51304566 3921 7.642594618186615E-5 0.009185457619897952 chrMT 16571 63 0.0038018224609257137 0.06154160062024155 chrX 155270560 25268 1.627352925113428E-4 0.013927094201177177 chrY 59373566 1244 2.0952084973302766E-5 0.004907581198738499