DOP-PCR

Project list (click to check detailed information)

IDProject AccessionOrganismStudy TitleCenter NameCancer TypeAmplification Method
1SRP002535Homo sapiensSingle Cell Tumor ProgressionCOLD SPRING HARBOR LABORATORYBreast cancer and liver cancerDOP-PCR
2SRP030642Homo sapiensSingle Neuron and Fibroblast SequencingUniversity of Virginianotcancer-neuron and fibroblastDOP-PCR,MDA
3SRP064210Homo sapiensSingle cell sequencing identifies clonal stasis and punctuated copy number evolution in triple negative breast cancer patientsThe UT MD Anderson Cancer CenterBreast cancerDOP-PCR
4SRP052908Homo sapienseWGA-Seq for single cell whole genome sequencingPeking UniversityColorectal cancer and HUVECeMDA,MDA,MALBAC,DOP-PCR
5SRP051114Homo sapiensHomo sapiens Genome sequencingBoston Childrens Hospitalnotcancer-neuron and lymphoblastDOP-PCR,MDA
6SRP016866Homo sapiensSingle cells Genome Sequencing-1BGI-Shenzhennotcancer-blood or embryosDOP-PCR
7SRP008292Homo sapiensSt. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project(PCGP): Whole Genome Sequencing of Childhood MedulloblastomaST. JUDE CHILDREN'S RESEARCH HOSPITALMedulloblastomaDOP-PCR
8SRP050588Homo sapiensComparison of Whole Genome Amplification Methods used in Single-cell SequencingBGIGastric cancer and lymphoblastoidMDA,MALBAC,DOP-PCR
9SRP055057Homo sapiensC_DOP_L method for single cell sequencingMemorial Sloan Kettering Cancer CenterBreast cancerDOP-PCR
10SRP041670Homo sapiensMus musculus and Homo sapiens Single Cell SequencingMassachusetts Institute of Technologynotcancer-fibroblast neuron and liverDOP-PCR
11SRP102259Homo sapiensSingle-Cell Whole Genome Analyses by Linear Amplification via Transposon Insertion (LIANTI)Harvard Universitynotcancer-fibroblastLIANTI,MDA,MALBAC,DOP-PCR
12SRP215441Homo sapiensbreast cancer single-cell whole genome sequencingPhilips Research North AmericaBreast cancerDOP-PCR
13SRP222840Homo sapiensHomo sapiensCold Spring Harbor LaboratoryBreast cancer and fibroblastDOP-PCR
14SRP081010Homo sapiensHuman, Mouse, Rhesus Raw sequence readsOregon Health & Science Universitynotcancer-lymphoblastoidDOP-PCR
15SRP224945Homo sapiensSingle-cell DNA replication sequencing (scRepli-seq): a method for mapping replication timing domains genome wide in single mammalian cellsGraduate School of Medicine, Mie Universitynotcancer-epithelial cellsDOP-PCR
16SRP116771Homo sapiensSynchronous ductal carcinoma in situ single cell DNA sequencingMD AndersonBreast cancerDOP-PCR
17SRP398595Homo sapienscbNIPT sequencing dataZhejiang Universitynotcancer-blood or saliva or amnioticfluidDOP-PCR
18ERP024468Homo sapiensComparison of seven single cell Whole Genome Amplification commercial kits using targeted sequencingEuropean Bioinformatics Institute;Department of Computer Science and Applied Mathematics;Weizmann Institute of Sciencenotcancer-embryonic stem and epithelial LA-PCR,MALBAC,DOP-PCR,MDA
19ERP137498Homo sapiensWhole Genome Amplification surveying yield, reproducibility and heterozygous balance, reported by MIPs targeting STRsEuropean Bioinformatics Institute;WISnotcancer-embryonic stem MALBAC,DOP-PCR,MDA
20SRP114962Homo sapiensAdaptive and Acquired Evolution in Response to Chemotherapy in Triple-Negative Breast CancerThe UT MD Anderson Cancer CenterBreast cancerDOP-PCR
21EGAS00001002102Homo sapiensDOP-PCR

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