SRP051114

See detailed project information

   Project:  SRP051114
   Organism:  Homo sapiens
   Study Title:  Homo sapiens Genome sequencing
   Center Name:  Boston Childrens Hospital
   Description:  Low-coverage single-cell whole-genome sequencing was performed on neurons from three normal and one pathological human brain (trisomy-18) as well as single cells from a normal lymphoblast cell line to identify somatic copy-number variants. Bulk and 10-cell lymphoblast as well as 100-neuron brain controls were also whole-genome sequenced as controls. A total of 138 single-cells were sequenced, DNA from 50 of the cells were prepared by genome amplification with GenomePlex (Sigma) and the DNA from the remaining 88 cells were prepared by genome amplification with multiple displacement amplification (MDA).
   Cell Type:  notcancer-neuron and lymphoblast
   Median Sequencing Depth:  0.062730
   Publication:  Single-Cell, Genome-wide Sequencing Identifies Clonal Somatic Copy-Number Variation in the Human Brain
   DOI:  10.1016/j.celrep.2014.07.043

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  5
   Number of runs:  150
   Number of single cell runs:  150
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP051114SAMN03256312SRR17085040.0512220810ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708504/SRR1708504.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708504
2SRP051114SAMN03256312SRR17085050.0458421400ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708505/SRR1708505.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708505
3SRP051114SAMN03256312SRR17085060.0445115770ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708506/SRR1708506.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708506
4SRP051114SAMN03256312SRR17085070.0464893400ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708507/SRR1708507.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708507
5SRP051114SAMN03256312SRR17085080.0533761250ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708508/SRR1708508.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708508
6SRP051114SAMN03256312SRR17085090.0478798580ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708509/SRR1708509.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708509
7SRP051114SAMN03256312SRR17085100.0476035490ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708510/SRR1708510.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708510
8SRP051114SAMN03256312SRR17085110.0503140920ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708511/SRR1708511.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708511
9SRP051114SAMN03256312SRR17085120.0532505190ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708512/SRR1708512.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708512
10SRP051114SAMN03256312SRR17085130.0463141770ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708513/SRR1708513.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708513
11SRP051114SAMN03256312SRR17085140.0499544840ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708514/SRR1708514.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708514
12SRP051114SAMN03256312SRR17085150.0461359100ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708515/SRR1708515.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708515
13SRP051114SAMN03256312SRR17085160.0524211710ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708516/SRR1708516.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708516
14SRP051114SAMN03256312SRR17085170.0484815530ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708517/SRR1708517.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708517
15SRP051114SAMN03256312SRR17085180.0485567340ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708518/SRR1708518.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708518
16SRP051114SAMN03256312SRR17085190.0488568510ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708519/SRR1708519.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708519
17SRP051114SAMN03256312SRR17085200.0524649540ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708520/SRR1708520.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708520
18SRP051114SAMN03256312SRR17085210.0556991390ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708521/SRR1708521.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708521
19SRP051114SAMN03256312SRR17085220.0512530130ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708522/SRR1708522.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708522
20SRP051114SAMN03256312SRR17085230.0538866370ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708523/SRR1708523.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708523
21SRP051114SAMN03256312SRR17085240.0513073190ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708524/SRR1708524.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708524
22SRP051114SAMN03256312SRR17085250.0522239070ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708525/SRR1708525.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708525
23SRP051114SAMN03256312SRR17085260.0494969120ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708526/SRR1708526.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708526
24SRP051114SAMN03256312SRR17085270.0479025030ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708527/SRR1708527.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708527
25SRP051114SAMN03256312SRR17085280.0486599290ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708528/SRR1708528.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708528
26SRP051114SAMN03256312SRR17085290.0617075630ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708529/SRR1708529.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708529
27SRP051114SAMN03256312SRR17085300.0497100540ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708530/SRR1708530.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708530
28SRP051114SAMN03256312SRR17085310.0438443090ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708531/SRR1708531.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708531
29SRP051114SAMN03256312SRR17085320.0348217630ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708532/SRR1708532.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708532
30SRP051114SAMN03256313SRR17085330.3194346930ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708533/SRR1708533.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708533
31SRP051114SAMN03256313SRR17085340.3833632380ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708534/SRR1708534.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708534
32SRP051114SAMN03256313SRR17085350.3551737370ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708535/SRR1708535.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708535
33SRP051114SAMN03256313SRR17085360.3694667680ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708536/SRR1708536.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708536
34SRP051114SAMN03256313SRR17085370.3245025260ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708537/SRR1708537.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708537
35SRP051114SAMN03256313SRR17085380.3220937770ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708538/SRR1708538.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708538
36SRP051114SAMN03256313SRR17085390.3838796100ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708539/SRR1708539.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708539
37SRP051114SAMN03256313SRR17085400.3653952070ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708540/SRR1708540.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708540
38SRP051114SAMN03256313SRR17085410.3526309490ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708541/SRR1708541.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708541
39SRP051114SAMN03256313SRR17085420.3496840840ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708542/SRR1708542.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708542
40SRP051114SAMN03256313SRR17085430.3330597690ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708543/SRR1708543.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708543
41SRP051114SAMN03256313SRR17085440.3585666460ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708544/SRR1708544.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708544
42SRP051114SAMN03256313SRR17085450.3125973370ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708545/SRR1708545.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708545
43SRP051114SAMN03256314SRR17085460.0626004870ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708546/SRR1708546.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708546
44SRP051114SAMN03256314SRR17085470.0573671030ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708547/SRR1708547.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708547
45SRP051114SAMN03256314SRR17085480.0602496040ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708548/SRR1708548.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708548
46SRP051114SAMN03256314SRR17085490.0723983720ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708549/SRR1708549.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708549
47SRP051114SAMN03256314SRR17085500.0670293970ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708550/SRR1708550.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708550
48SRP051114SAMN03256314SRR17085510.0785985240ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708551/SRR1708551.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708551
49SRP051114SAMN03256314SRR17085520.0644694770ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708552/SRR1708552.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708552
50SRP051114SAMN03256314SRR17085530.0606993460ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708553/SRR1708553.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708553
51SRP051114SAMN03256314SRR17085540.0585846010ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708554/SRR1708554.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708554
52SRP051114SAMN03256314SRR17085550.0666122190ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708555/SRR1708555.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708555
53SRP051114SAMN03256314SRR17085560.0635356510ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708556/SRR1708556.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708556
54SRP051114SAMN03256314SRR17085570.0635713020ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708557/SRR1708557.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708557
55SRP051114SAMN03256314SRR17085580.0655249850ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708558/SRR1708558.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708558
56SRP051114SAMN03256314SRR17085590.0677847990ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708559/SRR1708559.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708559
57SRP051114SAMN03256314SRR17085600.0618221090ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708560/SRR1708560.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708560
58SRP051114SAMN03256314SRR17085610.0635580490ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708561/SRR1708561.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708561
59SRP051114SAMN03256314SRR17085620.0683912200ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708562/SRR1708562.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708562
60SRP051114SAMN03256314SRR17085630.0645294740ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708563/SRR1708563.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708563
61SRP051114SAMN03256314SRR17085640.0621608640ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708564/SRR1708564.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708564
62SRP051114SAMN03256314SRR17085650.0637198570ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708565/SRR1708565.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708565
63SRP051114SAMN03256314SRR17085660.0616164030ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708566/SRR1708566.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708566
64SRP051114SAMN03256314SRR17085670.0561922090ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708567/SRR1708567.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708567
65SRP051114SAMN03256314SRR17085680.0628592670ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708568/SRR1708568.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708568
66SRP051114SAMN03256314SRR17085690.0700594490ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708569/SRR1708569.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708569
67SRP051114SAMN03256314SRR17085700.0655518870ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708570/SRR1708570.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708570
68SRP051114SAMN03256314SRR17085710.0611201460ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708571/SRR1708571.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708571
69SRP051114SAMN03256314SRR17085720.0650108340ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708572/SRR1708572.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708572
70SRP051114SAMN03256314SRR17085730.0665476720ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708573/SRR1708573.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708573
71SRP051114SAMN03256314SRR17085740.0644609860ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708574/SRR1708574.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708574
72SRP051114SAMN03256314SRR17085750.0690039260ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708575/SRR1708575.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708575
73SRP051114SAMN03256314SRR17085760.0583731740ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708576/SRR1708576.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708576
74SRP051114SAMN03256314SRR17085770.0616077300ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/007/SRR1708577/SRR1708577.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/007/SRR1708577
75SRP051114SAMN03256315SRR17085780.0584171640ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/008/SRR1708578/SRR1708578.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/008/SRR1708578
76SRP051114SAMN03256315SRR17085790.0770756850ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1708579/SRR1708579.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/009/SRR1708579
77SRP051114SAMN03256315SRR17085800.0759104840ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/000/SRR1708580/SRR1708580.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/000/SRR1708580
78SRP051114SAMN03256315SRR17085810.0981649730ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/001/SRR1708581/SRR1708581.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/001/SRR1708581
79SRP051114SAMN03256315SRR17085820.0778202070ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/002/SRR1708582/SRR1708582.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/002/SRR1708582
80SRP051114SAMN03256315SRR17085830.0776935940ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/003/SRR1708583/SRR1708583.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/003/SRR1708583
81SRP051114SAMN03256315SRR17085840.0884689900ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/004/SRR1708584/SRR1708584.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/004/SRR1708584
82SRP051114SAMN03256315SRR17085850.0804004870ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/005/SRR1708585/SRR1708585.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/005/SRR1708585
83SRP051114SAMN03256315SRR17085860.1031982050ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/006/SRR1708586/SRR1708586.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR170/006/SRR1708586
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