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Refer to the full list of Projects (click to check detailed information)

ID	Project Accession	Study Title	Center Name	Cancer Type	Amplification Method
1	SRP014781	Single Neuron Sequencing Quantifies L1 Retrotransposition and Somatic Mutation in the Human Brain	Boston Children's Hospital	notcancer-neuron	MDA
2	SRP017032	Homo sapiens Genome sequencing	Harvard University	Colorectal cancer	MALBAC
3	SRP052627	Whole-genome sequencing of glioblastoma nuclei	Dana-Farber Cancer Institute	Glioblastoma	MDA
4	SRP052954	Whole-genome sequencing of RPE-1 cells with induced micronuclei	Dana-Farber Cancer Institute	notcancer-retinal pigment epithelial cells	MDA
5	SRP017516	Homo sapiens strain:HuRef Genome sequencing	JCVI	notcancer-germ-sperm	MDA
6	SRP013494	Single sperm whole genome sequencing	Stanford University	notcancer-germ-sperm	MDA
7	SRP029757	CTC Sequencing on Lung Cancer Patients	Biodynamics Optical Imaging Center, Peking University	Lung cancer (CTC) and liver cancer	MALBAC
8	SRP026609	Single Human Oocyte Genome sequencing	Biodynamic Optical Imaging Center, PKU	notcancer-germ-oocytes	MALBAC
9	SRP002535	Single Cell Tumor Progression	COLD SPRING HARBOR LABORATORY	Breast cancer and liver cancer	DOP-PCR
10	SRP030642	Single Neuron and Fibroblast Sequencing	University of Virginia	notcancer-neuron and fibroblast	DOP-PCR,MDA
11	SRP064210	Single cell sequencing identifies clonal stasis and punctuated copy number evolution in triple negative breast cancer patients	The UT MD Anderson Cancer Center	Breast cancer	DOP-PCR
12	SRP052908	eWGA-Seq for single cell whole genome sequencing	Peking University	Colorectal cancer and HUVEC	eMDA,MDA,MALBAC,DOP-PCR
13	SRP051114	Homo sapiens Genome sequencing	Boston Childrens Hospital	notcancer-neuron and lymphoblast	DOP-PCR,MDA
14	SRP016866	Single cells Genome Sequencing-1	BGI-Shenzhen	notcancer-blood or embryos	DOP-PCR
15	SRP041470	Single-neuron whole-genome analysis of spatial patterns of somatic mutation in the human brain	Boston Children's Hospital	notcancer-neuron	MDA
16	SRP008292	St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project(PCGP): Whole Genome Sequencing of Childhood Medulloblastoma	ST. JUDE CHILDREN'S RESEARCH HOSPITAL	Medulloblastoma	DOP-PCR
17	SRP050588	Comparison of Whole Genome Amplification Methods used in Single-cell Sequencing	BGI	Gastric cancer and lymphoblastoid	MDA,MALBAC,DOP-PCR
18	SRP013572	Homo sapiens (taxid:9606) Genome Sequencing	UT MD Anderson Cancer Center	Breast cancer	MDA
19	SRP061939	Homo sapiens Genome sequencing and assembly	Children's Hospital Boston / Harvard Medical School	notcancer-neuron	MDA
20	SRP055057	C_DOP_L method for single cell sequencing	Memorial Sloan Kettering Cancer Center	Breast cancer	DOP-PCR
21	SRP127755	Prostate Single Cell Genome Sequencing	Beijing Hospital, Beijing	Prostate cancer	MALBAC
22	SRP041670	Mus musculus and Homo sapiens Single Cell Sequencing	Massachusetts Institute of Technology	notcancer-fibroblast neuron and liver	DOP-PCR
23	SRP067062	Single cell sequencing of human dermal fibroblast	Albert Einstein College of Medicine	notcancer-dermal fibroblast	SCMDA,MDA
24	SRP106579	Single-stranded Sequencing using microfluidic reactors (SISSOR)	Univ. of California San Diego	notcancer-skin fibroblast	MDA
25	SRP102259	Single-Cell Whole Genome Analyses by Linear Amplification via Transposon Insertion (LIANTI)	Harvard University	notcancer-fibroblast	LIANTI,MDA,MALBAC,DOP-PCR
26	SRP093555	Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer	Peking University	Colorectal cancer	MALBAC
27	SRP074289	Colorectal Cancer Single Cell Sequencing	UT MD Anderson Cancer Center	Colorectal cancer	MDA
28	SRP178894	Single cell whole genome sequencing using primary template amplification (PTA)	St. Jude Children's Research Hospital	notcancer-lymphoblastoid and cord blood	PTA,SCMDA
29	SRP058890	Homo sapiens	UT MD Anderson Cancer Center	Breast cancer	MDA
30	SRP259526	Breast Tumors Maintain a Reservoir of Subclonal Diversity During Primary Expansion	MD Anderson Cancer Center	Breast cancer	ACT
31	SRP194057	Accurate SNV detection in single cells by META-CS	Harvard University	notcancer-germ-eHAP and sperm	META-CS
32	SRP215441	breast cancer single-cell whole genome sequencing	Philips Research North America	Breast cancer	DOP-PCR
33	SRP222840	Homo sapiens	Cold Spring Harbor Laboratory	Breast cancer and fibroblast	DOP-PCR
34	SRP219003	Landscape of Somatic Mutations in B Lymphocytes Across Human Lifespan	Albert Einstein College of Medicine	notcancer-B lymphocytes	MDA
35	SRP017186	Human Sperm Genome Sequencing	Harvard University	notcancer-germ-sperm	MALBAC
36	SRP081010	Human, Mouse, Rhesus Raw sequence reads	Oregon Health & Science University	notcancer-lymphoblastoid	DOP-PCR
37	SRP224945	Single-cell DNA replication sequencing (scRepli-seq): a method for mapping replication timing domains genome wide in single mammalian cells	Graduate School of Medicine, Mie University	notcancer-epithelial cells	DOP-PCR
38	SRP116771	Synchronous ductal carcinoma in situ single cell DNA sequencing	MD Anderson	Breast cancer	DOP-PCR
39	SRP068920	Single Cell Sequencing of Circulating Tumor Cells from Various Cancer Types	PKU	Colorectal/breast/gastric/prostate/ cancer (CTC)	MALBAC
40	SRP186739	Inferring Evolution and Progression of Small-Cell Lung Cancer by Single-Cell Sequencing of Circulating Tumor Cells	PKU	Small-cell lung cancer (CTC)	MALBAC
41	SRP418207	Genetic Analysis of Heterogeneous Subsets of Circulating Tumour Cells from High Grade Serous Ovarian Carcinoma Patients	Edith Cowan University	Ovarian cancer	LAPCR
42	SRP356287	Archival single cell sequencing reveals persistent subclones over years to decades of DCIS progression	MD Anderson Cancer Center	Breast/Lung/Postrate cancer	Arc-well
43	SRP408873	Homo sapiens Raw sequence reads	Xiamen University	Lung cancer	dd-scCNV Seq
44	SRP398595	cbNIPT sequencing data	Zhejiang University	notcancer-blood or saliva or amnioticfluid	DOP-PCR
45	SRP461548	Accessible high-throughput single-cell whole genome sequencing with paired chromatin accessibility	Adey Lab, MMG, Oregon Health & Science University	notcancer-lymphocytes	scATAC-seq
46	SRP345275	Maintenance of Genome Sequence Integrity in Long -and Short-lived Rodent Species	ALBERT EINSTEIN COLLEGE OF MEDICINE, INC	notcancer-primary lung fibroblasts	SCMDA
47	SRP366675	Single-cell analysis of Somatic Mutations in Human Bronchial Epithelial Cells in Relation to Aging and Smoking	ALBERT EINSTEIN COLLEGE OF MEDICINE, INC	notcancer-lung	MDA
48	SRP091915	Genome-wide chromosome conformation during early human cortical development	UNIVERSITY OF CALIFORNIA LOS ANGELES	notcancer-liver	MDA
49	SRP320769	Single-cell analysis of somatic mutation burden in mammary cells of patho	ALBERT EINSTEIN COLLEGE OF MEDICINE, INC	notcancer-mammary epithelial	SCMDA
50	ERP024468	Comparison of seven single cell Whole Genome Amplification commercial kits using targeted sequencing	European Bioinformatics Institute;Department of Computer Science and Applied Mathematics;Weizmann Institute of Science	notcancer-embryonic stem and epithelial	LA-PCR,MALBAC,DOP-PCR,MDA
51	ERP137498	Whole Genome Amplification surveying yield, reproducibility and heterozygous balance, reported by MIPs targeting STRs	European Bioinformatics Institute;WIS	notcancer-embryonic stem	MALBAC,DOP-PCR,MDA
52	SRP114962	Adaptive and Acquired Evolution in Response to Chemotherapy in Triple-Negative Breast Cancer	The UT MD Anderson Cancer Center	Breast cancer	DOP-PCR
53	SRP188831	High-throughput single-cell whole-genome amplification through centrifugal emulsification and eMDA	Peking University	Cervical cancer	MiCA-eMDA
54	SRP341378	Single-cell sequencing of human cell lines	Cornell University	notcancer-lymphoblastoid and embryonic stem and Tumor-derived	MDA,DLP+
55	SRP126192	Cell Identity Determination In Human Brain: Somatic mutation and cell lineage	CHILDREN'S HOSPITAL	notcancer-neuron	PTA
56	EGAS00001002170				DLP
57	EGAS00001002102				DOP-PCR
58	EGAS00001006347
59	EGAS00001006024				snDNA-seq
60	EGAS00001003190				DLP+
61	EGAS00001007288				PTA
62	EGAS00001006343				DLP+
63	EGAS00001004448				DLP+

HSCGD Human Single Cell Genome Database

Refer to the full list of Projects (click to check detailed information)