SRP341378

See detailed project information

   Project:  SRP341378
   Organism:  Homo sapiens
   Study Title:  Single-cell sequencing of human cell lines
   Center Name:  Cornell University
   Description:  Whole-genome sequencing was performed on single human cells from lymphoblastoid cell lines (GM12878, GM12891, and GM12892), embryonic stem cell line (H1, H7, and H9), and cancer cell lines (HCT-116, RKO, and MCF-7). Single-cell isolation, barcoding, and amplification was performed with the 10x Genomics Single-Cell CNV platform.
   Cell Type:  notcancer-lymphoblastoid and embryonic stem and Tumor-derived
   Median Sequencing Depth:  0.000000
   Publication:  High-throughput analysis of single human cells reveals the complex nature of DNA replication timing control
   DOI:  10.1038/s41467-022-30212-y

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  9
   Number of runs:  26
   Number of single cell runs:  26
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP341378SAMN22234229SRR163282420.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/042/SRR16328242/SRR16328242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/042/SRR16328242/SRR16328242_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/042/SRR16328242
2SRP341378SAMN22234229SRR163282430.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/043/SRR16328243/SRR16328243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/043/SRR16328243/SRR16328243_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/043/SRR16328243
3SRP341378SAMN22234228SRR163282440.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/044/SRR16328244/SRR16328244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/044/SRR16328244/SRR16328244_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/044/SRR16328244
4SRP341378SAMN22234228SRR163282450.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/045/SRR16328245/SRR16328245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/045/SRR16328245/SRR16328245_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/045/SRR16328245
5SRP341378SAMN22234227SRR163282460.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/046/SRR16328246/SRR16328246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/046/SRR16328246/SRR16328246_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/046/SRR16328246
6SRP341378SAMN22234227SRR163282470.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/047/SRR16328247/SRR16328247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/047/SRR16328247/SRR16328247_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/047/SRR16328247
7SRP341378SAMN22234226SRR163282480.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/048/SRR16328248/SRR16328248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/048/SRR16328248/SRR16328248_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/048/SRR16328248
8SRP341378SAMN22234226SRR163282490.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/049/SRR16328249/SRR16328249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/049/SRR16328249/SRR16328249_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/049/SRR16328249
9SRP341378SAMN22234229SRR163282500.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/050/SRR16328250/SRR16328250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/050/SRR16328250/SRR16328250_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/050/SRR16328250
10SRP341378SAMN22234225SRR163282510.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/051/SRR16328251/SRR16328251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/051/SRR16328251/SRR16328251_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/051/SRR16328251
11SRP341378SAMN22234225SRR163282520.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/052/SRR16328252/SRR16328252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/052/SRR16328252/SRR16328252_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/052/SRR16328252
12SRP341378SAMN10919114SRR163520260.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/026/SRR16352026/SRR16352026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/026/SRR16352026/SRR16352026_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/026/SRR16352026
13SRP341378SAMN10919114SRR163520270.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/027/SRR16352027/SRR16352027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/027/SRR16352027/SRR16352027_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/027/SRR16352027
14SRP341378SAMN10919114SRR163520280.0000000000
15SRP341378SAMN10919114SRR163520290.0000000000
16SRP341378SAMN10919114SRR163520300.0000000000
17SRP341378SAMN10919114SRR163520310.0000000000
18SRP341378SAMN10919114SRR163520320.0000000000
19SRP341378SAMN10919114SRR163520330.0000000000
20SRP341378SAMN22335223SRR163620160.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/016/SRR16362016/SRR16362016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/016/SRR16362016/SRR16362016_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/016/SRR16362016
21SRP341378SAMN22335222SRR163620170.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/017/SRR16362017/SRR16362017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/017/SRR16362017/SRR16362017_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/017/SRR16362017
22SRP341378SAMN22335222SRR163620180.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/018/SRR16362018/SRR16362018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/018/SRR16362018/SRR16362018_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/018/SRR16362018
23SRP341378SAMN22335221SRR163620190.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/019/SRR16362019/SRR16362019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/019/SRR16362019/SRR16362019_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/019/SRR16362019
24SRP341378SAMN22335221SRR163620200.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/020/SRR16362020/SRR16362020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/020/SRR16362020/SRR16362020_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/020/SRR16362020
25SRP341378SAMN22335221SRR163620210.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/021/SRR16362021/SRR16362021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/021/SRR16362021/SRR16362021_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/021/SRR16362021
26SRP341378SAMN22335221SRR163620220.0000000000ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/022/SRR16362022/SRR16362022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/022/SRR16362022/SRR16362022_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR163/022/SRR16362022



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