SRP178894

See detailed project information

   Project:  SRP178894
   Organism:  Homo sapiens
   Study Title:  Single cell whole genome sequencing using primary template amplification (PTA)
   Center Name:  St. Jude Children's Research Hospital
   Description:  Whole genome sequencing of single cells from the reference reference sample NA12878, and primary CD34+ cord blood cells exposed in culture to mutagenic compounds using primary template-directed amplification (PTA). A high fidelity genomic DNA amplification method that allows accurate genomic variant detection from single cells.
   Cell Type:  notcancer-lymphoblastoid and cord blood
   Median Sequencing Depth:  31.828087
   Publication:  Accurate genomic variant detection in single cells with primary template-directed amplification
   DOI:  10.1073/pnas.2024176118

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  51
   Number of runs:  51
   Number of single cell runs:  49
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP178894SAMN10737290SRR843825135.8140190600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438251/SRR8438251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438251/SRR8438251_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438251
2SRP178894SAMN10737291SRR843825233.9273558400ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438252/SRR8438252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438252/SRR8438252_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/002/SRR8438252
3SRP178894SAMN10737300SRR843825346.3948041500ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438253/SRR8438253.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438253/SRR8438253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438253/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/003/SRR8438253
4SRP178894SAMN10737284SRR843825434.0984565800ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438254/SRR8438254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438254/SRR8438254_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/004/SRR8438254
5SRP178894SAMN10737263SRR843825528.8826887800ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438255/SRR8438255.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438255/SRR8438255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438255/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/005/SRR8438255
6SRP178894SAMN10737285SRR843825632.5475818600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438256/SRR8438256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438256/SRR8438256_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/006/SRR8438256
7SRP178894SAMN10737303SRR843825728.0243308000ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438257/SRR8438257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438257/SRR8438257_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/007/SRR8438257
8SRP178894SAMN10737286SRR843825834.3320802900ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438258/SRR8438258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438258/SRR8438258_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/008/SRR8438258
9SRP178894SAMN10737287SRR843825934.9120797000ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438259/SRR8438259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438259/SRR8438259_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/009/SRR8438259
10SRP178894SAMN10737299SRR843826052.6025476100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438260/SRR8438260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438260/SRR8438260_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/000/SRR8438260
11SRP178894SAMN10737298SRR843826128.9994333100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438261/SRR8438261.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438261/SRR8438261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438261/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438261
12SRP178894SAMN10737301SRR843826232.7720209500ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438262/SRR8438262.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438262/SRR8438262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438262/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/002/SRR8438262
13SRP178894SAMN10737278SRR843826326.4228158500ftp.sra.ebi.ac.uk/vol1/srr/SRR843/003/SRR8438263
14SRP178894SAMN10737277SRR843826426.1234376200ftp.sra.ebi.ac.uk/vol1/srr/SRR843/004/SRR8438264
15SRP178894SAMN10737276SRR843826529.2413625600ftp.sra.ebi.ac.uk/vol1/srr/SRR843/005/SRR8438265
16SRP178894SAMN10737275SRR843826632.7215378800ftp.sra.ebi.ac.uk/vol1/srr/SRR843/006/SRR8438266
17SRP178894SAMN10737304SRR843826734.2052277900ftp.sra.ebi.ac.uk/vol1/srr/SRR843/007/SRR8438267
18SRP178894SAMN10737282SRR843826828.3917998000ftp.sra.ebi.ac.uk/vol1/srr/SRR843/008/SRR8438268
19SRP178894SAMN10737281SRR843826933.0997409700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438269/SRR8438269.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438269/SRR8438269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438269/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/009/SRR8438269
20SRP178894SAMN10737280SRR843827022.3679407200ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438270/SRR8438270.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438270/SRR8438270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438270/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/000/SRR8438270
21SRP178894SAMN10737283SRR843827153.2313440700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438271/SRR8438271.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438271/SRR8438271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438271/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438271
22SRP178894SAMN10737305SRR843827232.6273627600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438272/SRR8438272.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438272/SRR8438272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438272/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/002/SRR8438272
23SRP178894SAMN10737295SRR843827348.3864363600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438273/SRR8438273.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438273/SRR8438273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438273/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/003/SRR8438273
24SRP178894SAMN10737302SRR843827444.1238546700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438274/SRR8438274.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438274/SRR8438274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438274/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/004/SRR8438274
25SRP178894SAMN10737294SRR843827535.5371183600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438275/SRR8438275.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438275/SRR8438275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438275/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/005/SRR8438275
26SRP178894SAMN10737264SRR843827630.7299316900ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438276/SRR8438276.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438276/SRR8438276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438276/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/006/SRR8438276
27SRP178894SAMN10737257SRR843827731.8280873200ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438277/SRR8438277.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438277/SRR8438277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438277/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/007/SRR8438277
28SRP178894SAMN10737258SRR843827825.0905373400ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438278/SRR8438278.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438278/SRR8438278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438278/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/008/SRR8438278
29SRP178894SAMN10737255SRR843827929.9516700800ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438279/SRR8438279.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438279/SRR8438279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438279/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/009/SRR8438279
30SRP178894SAMN10737256SRR843828030.9943060500ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438280/SRR8438280.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438280/SRR8438280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438280/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/000/SRR8438280
31SRP178894SAMN10737261SRR843828126.9454734100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438281/SRR8438281.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438281/SRR8438281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438281/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438281
32SRP178894SAMN10737262SRR843828228.1375822600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438282/SRR8438282.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438282/SRR8438282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438282/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/002/SRR8438282
33SRP178894SAMN10737259SRR843828335.9967805100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438283/SRR8438283.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438283/SRR8438283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438283/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/003/SRR8438283
34SRP178894SAMN10737260SRR843828430.2546554200ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438284/SRR8438284.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438284/SRR8438284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438284/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/004/SRR8438284
35SRP178894SAMN10737297SRR843828529.6938861700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438285/SRR8438285.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438285/SRR8438285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438285/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/005/SRR8438285
36SRP178894SAMN10737273SRR843828626.0319154900ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438286/SRR8438286.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438286/SRR8438286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438286/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/006/SRR8438286
37SRP178894SAMN10737274SRR843828728.3857979500ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438287/SRR8438287.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438287/SRR8438287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438287/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/007/SRR8438287
38SRP178894SAMN10737292SRR843828829.9075801100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438288/SRR8438288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438288/SRR8438288_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/008/SRR8438288
39SRP178894SAMN10737293SRR843828933.2328930700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438289/SRR8438289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438289/SRR8438289_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/009/SRR8438289
40SRP178894SAMN10737267SRR843829036.6697461500ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438290/SRR8438290.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438290/SRR8438290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438290/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/000/SRR8438290
41SRP178894SAMN10737268SRR843829131.0161687600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438291/SRR8438291.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438291/SRR8438291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438291/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438291
42SRP178894SAMN10737265SRR843829230.6717796600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438292/SRR8438292.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438292/SRR8438292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/002/SRR8438292/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/002/SRR8438292
43SRP178894SAMN10737266SRR843829330.4114929000ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438293/SRR8438293.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438293/SRR8438293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/003/SRR8438293/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/003/SRR8438293
44SRP178894SAMN10737271SRR843829428.9908288700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438294/SRR8438294.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438294/SRR8438294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/004/SRR8438294/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/004/SRR8438294
45SRP178894SAMN10737272SRR843829531.6628006100ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438295/SRR8438295.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438295/SRR8438295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/005/SRR8438295/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/005/SRR8438295
46SRP178894SAMN10737269SRR843829632.8286031000ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438296/SRR8438296.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438296/SRR8438296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/006/SRR8438296/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/006/SRR8438296
47SRP178894SAMN10737270SRR843829728.5641316600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438297/SRR8438297.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438297/SRR8438297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/007/SRR8438297/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/007/SRR8438297
48SRP178894SAMN10737288SRR843829833.7021036400ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438298/SRR8438298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/008/SRR8438298/SRR8438298_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/008/SRR8438298
49SRP178894SAMN10737306SRR843829937.3699090700ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/009/SRR8438299/SRR8438299.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/009/SRR8438299
50SRP178894SAMN10737289SRR843830033.6582507200ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438300/SRR8438300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/000/SRR8438300/SRR8438300_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR843/000/SRR8438300
51SRP178894SAMN10737296SRR843830148.6162934600ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438301/SRR8438301.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438301/SRR8438301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR843/001/SRR8438301/SRR84ftp.sra.ebi.ac.uk/vol1/srr/SRR843/001/SRR8438301



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