See detailed project information

   Project:  SRP026609
   Organism:  Homo sapiens
   Study Title:  Single Human Oocyte Genome sequencing
   Center Name:  Biodynamic Optical Imaging Center, PKU
   Description:  Single cell genomic analyses are critical for reproductive biology since each germline cell has a unique genome due to homologous recombination. Genomes of single sperm cells have been sequenced recently. Similar genomic analyses on oocytes are highly desirable because their importance for not only meiosis research, but also in vitro fertilization (IVF), i.e. selecting oocytes free of aneuploidy and point mutations associated with Mendelian diseases. Here we performed whole genomic amplification and sequencing of human oocytes using multiple annealing and looping based amplification cycle (MALBAC).
   Cell Type:  notcancer-germ-oocytes
   Median Sequencing Depth:  0.766713
   Publication:  Genome analyses of single human oocytes
   DOI:  10.1016/j.cell.2013.11.040

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  183
   Number of runs:  183
   Number of single cell runs:  183
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)
SRA Files
(Copy ftp address to download)
1SRP026609SAMN02204458SRR9268871.0992460710ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926887/SRR926887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926887/SRR926887_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926887
2SRP026609SAMN02204459SRR9268880.8083045370ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926888/SRR926888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926888/SRR926888_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926888
3SRP026609SAMN02204460SRR9268891.1787907330ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926889/SRR926889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926889/SRR926889_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926889
4SRP026609SAMN02204461SRR9268900.6677619610ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926890/SRR926890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926890/SRR926890_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926890
5SRP026609SAMN02204462SRR9268911.2840028570ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926891/SRR926891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926891/SRR926891_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926891
6SRP026609SAMN02204463SRR9268920.7015924120ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926892/SRR926892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926892/SRR926892_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926892
7SRP026609SAMN02204464SRR9268931.3056802970ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926893/SRR926893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926893/SRR926893_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926893
8SRP026609SAMN02204465SRR9268940.9353244850ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926894/SRR926894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926894/SRR926894_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926894
9SRP026609SAMN02204466SRR9268951.0237690720ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926895/SRR926895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926895/SRR926895_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926895
10SRP026609SAMN02204467SRR9268960.8934889080ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926896/SRR926896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926896/SRR926896_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926896
11SRP026609SAMN02204468SRR9268970.7227906090ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926897/SRR926897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926897/SRR926897_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926897
12SRP026609SAMN02204469SRR9268981.0268871630ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926898/SRR926898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926898/SRR926898_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926898
13SRP026609SAMN02204470SRR9268991.1339214060ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926899/SRR926899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926899/SRR926899_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926899
14SRP026609SAMN02204471SRR9269001.3431479160ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926900/SRR926900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926900/SRR926900_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926900
15SRP026609SAMN02204472SRR9269010.9616181720ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926901/SRR926901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926901/SRR926901_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926901
16SRP026609SAMN02204473SRR9269020.6513111330ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926902/SRR926902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926902/SRR926902_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926902
17SRP026609SAMN02204474SRR9269030.8981752960ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926903/SRR926903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926903/SRR926903_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926903
18SRP026609SAMN02204475SRR9269040.7083779770ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926904/SRR926904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926904/SRR926904_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926904
19SRP026609SAMN02204476SRR9269050.9011175120ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926905/SRR926905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926905/SRR926905_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926905
20SRP026609SAMN02204477SRR9269060.8872196540ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926906/SRR926906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926906/SRR926906_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926906
21SRP026609SAMN02204478SRR9269070.8037018140ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926907/SRR926907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926907/SRR926907_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926907
22SRP026609SAMN02204479SRR9269080.8290869930ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926908/SRR926908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926908/SRR926908_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926908
23SRP026609SAMN02204480SRR9269091.0326145330ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926909/SRR926909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926909/SRR926909_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926909
24SRP026609SAMN02204481SRR9269101.0050000390ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926910/SRR926910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926910/SRR926910_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926910
25SRP026609SAMN02204482SRR9269110.7667129460ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926911/SRR926911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926911/SRR926911_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926911
26SRP026609SAMN02204483SRR9269120.7974915120ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926912/SRR926912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926912/SRR926912_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926912
27SRP026609SAMN02204484SRR9269130.8830262790ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926913/SRR926913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926913/SRR926913_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926913
28SRP026609SAMN02204485SRR9269140.9428380120ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926914/SRR926914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926914/SRR926914_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926914
29SRP026609SAMN02204486SRR9269151.0066362020ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926915/SRR926915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926915/SRR926915_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926915
30SRP026609SAMN02204487SRR9269161.0304635960ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926916/SRR926916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926916/SRR926916_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926916
31SRP026609SAMN02204488SRR9269170.9249487790ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926917/SRR926917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926917/SRR926917_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926917
32SRP026609SAMN02204489SRR9269180.8070695460ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926918/SRR926918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926918/SRR926918_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926918
33SRP026609SAMN02204490SRR9269190.9346902080ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926919/SRR926919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926919/SRR926919_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926919
34SRP026609SAMN02204491SRR9269200.7117313240ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926920/SRR926920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926920/SRR926920_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926920
35SRP026609SAMN02204492SRR9269210.9344694580ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926921/SRR926921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926921/SRR926921_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926921
36SRP026609SAMN02204494SRR9269220.4755736530ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926922/SRR926922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926922/SRR926922_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926922
37SRP026609SAMN02204495SRR9269230.4312843230ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926923/SRR926923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926923/SRR926923_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926923
38SRP026609SAMN02204493SRR9269240.4412478530ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926924/SRR926924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926924/SRR926924_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926924
39SRP026609SAMN02204496SRR9269250.3641037710ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926925/SRR926925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926925/SRR926925_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926925
40SRP026609SAMN02204497SRR9269260.3539359040ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926926/SRR926926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926926/SRR926926_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926926
41SRP026609SAMN02204498SRR9269270.3506530660ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926927/SRR926927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926927/SRR926927_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926927
42SRP026609SAMN02204499SRR9269280.3740903530ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926928/SRR926928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926928/SRR926928_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926928
43SRP026609SAMN02204500SRR9269290.3769274510ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926929/SRR926929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926929/SRR926929_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926929
44SRP026609SAMN02204501SRR9269300.3149137580ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926930/SRR926930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926930/SRR926930_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926930
45SRP026609SAMN02204502SRR9269310.3708045640ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926931/SRR926931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926931/SRR926931_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926931
46SRP026609SAMN02204503SRR9269320.3894341160ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926932/SRR926932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926932/SRR926932_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926932
47SRP026609SAMN02204504SRR9269330.2560651220ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926933/SRR926933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926933/SRR926933_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926933
48SRP026609SAMN02204505SRR9269340.4983686090ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926934/SRR926934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926934/SRR926934_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926934
49SRP026609SAMN02204506SRR9269350.3900621840ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926935/SRR926935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926935/SRR926935_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926935
50SRP026609SAMN02204507SRR9269360.3877455780ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926936/SRR926936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926936/SRR926936_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926936
51SRP026609SAMN02204508SRR9269370.5111582340ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926937/SRR926937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926937/SRR926937_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926937
52SRP026609SAMN02204509SRR9269380.3777980300ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926938/SRR926938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926938/SRR926938_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926938
53SRP026609SAMN02204510SRR9269390.1872411520ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926939/SRR926939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926939/SRR926939_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926939
54SRP026609SAMN02204511SRR9269400.3927348420ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926940/SRR926940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926940/SRR926940_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926940
55SRP026609SAMN02204512SRR9269410.2358472330ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926941/SRR926941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926941/SRR926941_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926941
56SRP026609SAMN02204513SRR9269420.3655172790ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926942/SRR926942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/SRR926942/SRR926942_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR926/SRR926942
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