SRP052954

See detailed project information

   Project:  SRP052954
   Organism:  Homo sapiens
   Study Title:  Whole-genome sequencing of RPE-1 cells with induced micronuclei
   Center Name:  Dana-Farber Cancer Institute
   Description:  Whole-genome sequencing is performed on single RPE-1 cells to study the mutational outcomes of abnormal nuclear structures called micronuclei.
   Cell Type:  notcancer-retinal pigment epithelial cells
   Median Sequencing Depth:  4.684265
   Publication:  Chromothripsis from DNA damage in micronuclei
   DOI:  10.1038/nature14493

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  1
   Number of runs:  43
   Number of single cell runs:  43
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP052954SAMN03288317SRR177844214.0593948100ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/002/SRR1778442/SRR1778442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/002/SRR1778442/SRR1778442_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/002/SRR1778442
2SRP052954SAMN03288317SRR17793294.3379584830ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/009/SRR1779329/SRR1779329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/009/SRR1779329/SRR1779329_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/009/SRR1779329
3SRP052954SAMN03288317SRR17793304.6842650460ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/000/SRR1779330/SRR1779330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/000/SRR1779330/SRR1779330_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/000/SRR1779330
4SRP052954SAMN03288317SRR17793318.3588289110ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/001/SRR1779331/SRR1779331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/001/SRR1779331/SRR1779331_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/001/SRR1779331
5SRP052954SAMN03288317SRR17793333.9829734610ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/003/SRR1779333/SRR1779333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/003/SRR1779333/SRR1779333_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/003/SRR1779333
6SRP052954SAMN03288317SRR17793344.2888901970ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/004/SRR1779334/SRR1779334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/004/SRR1779334/SRR1779334_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/004/SRR1779334
7SRP052954SAMN03288317SRR17793354.5176354850ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/005/SRR1779335/SRR1779335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/005/SRR1779335/SRR1779335_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/005/SRR1779335
8SRP052954SAMN03288317SRR17793364.6925536110ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/006/SRR1779336/SRR1779336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/006/SRR1779336/SRR1779336_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/006/SRR1779336
9SRP052954SAMN03288317SRR17793384.0187943810ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/008/SRR1779338/SRR1779338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/008/SRR1779338/SRR1779338_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/008/SRR1779338
10SRP052954SAMN03288317SRR17793394.8930131740ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/009/SRR1779339/SRR1779339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/009/SRR1779339/SRR1779339_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/009/SRR1779339
11SRP052954SAMN03288317SRR17793413.8728983860ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/001/SRR1779341/SRR1779341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/001/SRR1779341/SRR1779341_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/001/SRR1779341
12SRP052954SAMN03288317SRR17793424.7356821440ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/002/SRR1779342/SRR1779342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR177/002/SRR1779342/SRR1779342_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR177/002/SRR1779342
13SRP052954SAMN03288317SRR17818074.4142754310ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781807/SRR1781807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781807/SRR1781807_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/007/SRR1781807
14SRP052954SAMN03288317SRR17818084.5274140420ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781808/SRR1781808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781808/SRR1781808_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/008/SRR1781808
15SRP052954SAMN03288317SRR17818094.0865621730ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781809/SRR1781809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781809/SRR1781809_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/009/SRR1781809
16SRP052954SAMN03288317SRR17818104.8888567270ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/000/SRR1781810/SRR1781810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/000/SRR1781810/SRR1781810_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/000/SRR1781810
17SRP052954SAMN03288317SRR17818139.1348281770ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781813/SRR1781813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781813/SRR1781813_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781813
18SRP052954SAMN03288317SRR178182211.7409899200ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781822/SRR1781822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781822/SRR1781822_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/002/SRR1781822
19SRP052954SAMN03288317SRR17818235.1094237880ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781823/SRR1781823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781823/SRR1781823_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781823
20SRP052954SAMN03288317SRR17818245.3040722020ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/004/SRR1781824/SRR1781824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/004/SRR1781824/SRR1781824_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/004/SRR1781824
21SRP052954SAMN03288317SRR17818254.4393146050ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781825/SRR1781825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781825/SRR1781825_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/005/SRR1781825
22SRP052954SAMN03288317SRR17818434.5516375400ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781843/SRR1781843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781843/SRR1781843_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781843
23SRP052954SAMN03288317SRR178184510.8645219800ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781845/SRR1781845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781845/SRR1781845_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/005/SRR1781845
24SRP052954SAMN03288317SRR17818464.3493101410ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/006/SRR1781846/SRR1781846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/006/SRR1781846/SRR1781846_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/006/SRR1781846
25SRP052954SAMN03288317SRR17818474.4827337050ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781847/SRR1781847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781847/SRR1781847_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/007/SRR1781847
26SRP052954SAMN03288317SRR17818485.7543878480ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781848/SRR1781848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781848/SRR1781848_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/008/SRR1781848
27SRP052954SAMN03288317SRR17818494.7833269180ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781849/SRR1781849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781849/SRR1781849_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/009/SRR1781849
28SRP052954SAMN03288317SRR17818514.9373102100ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781851/SRR1781851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781851/SRR1781851_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/001/SRR1781851
29SRP052954SAMN03288317SRR17818524.2570045860ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781852/SRR1781852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781852/SRR1781852_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/002/SRR1781852
30SRP052954SAMN03288317SRR178185311.2049444100ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781853/SRR1781853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781853/SRR1781853_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781853
31SRP052954SAMN03288317SRR178185410.6254041100ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/004/SRR1781854/SRR1781854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/004/SRR1781854/SRR1781854_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/004/SRR1781854
32SRP052954SAMN03288317SRR17818555.8412651490ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781855/SRR1781855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/005/SRR1781855/SRR1781855_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/005/SRR1781855
33SRP052954SAMN03288317SRR17818565.0783538710ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/006/SRR1781856/SRR1781856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/006/SRR1781856/SRR1781856_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/006/SRR1781856
34SRP052954SAMN03288317SRR17818574.4876163320ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781857/SRR1781857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/007/SRR1781857/SRR1781857_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/007/SRR1781857
35SRP052954SAMN03288317SRR17818584.9590023210ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781858/SRR1781858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/008/SRR1781858/SRR1781858_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/008/SRR1781858
36SRP052954SAMN03288317SRR17818816.3121022990ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781881/SRR1781881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781881/SRR1781881_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/001/SRR1781881
37SRP052954SAMN03288317SRR17818824.3533834660ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781882/SRR1781882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781882/SRR1781882_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/002/SRR1781882
38SRP052954SAMN03288317SRR17818833.6726918650ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781883/SRR1781883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781883/SRR1781883_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781883
39SRP052954SAMN03288317SRR17819101.7417563850ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/000/SRR1781910/SRR1781910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/000/SRR1781910/SRR1781910_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/000/SRR1781910
40SRP052954SAMN03288317SRR17819111.3217820020ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781911/SRR1781911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/001/SRR1781911/SRR1781911_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/001/SRR1781911
41SRP052954SAMN03288317SRR17819121.4300838380ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781912/SRR1781912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/002/SRR1781912/SRR1781912_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/002/SRR1781912
42SRP052954SAMN03288317SRR17819131.3643811170ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781913/SRR1781913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/003/SRR1781913/SRR1781913_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/003/SRR1781913
43SRP052954SAMN03288317SRR17818796.7634541690ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781879/SRR1781879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR178/009/SRR1781879/SRR1781879_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR178/009/SRR1781879



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