SRP014781

See detailed project information

   Project:  SRP014781
   Organism:  Homo sapiens
   Study Title:  Single Neuron Sequencing Quantifies L1 Retrotransposition and Somatic Mutation in the Human Brain
   Center Name:  Boston Children's Hospital
   Description:  300 single neurons, and additional bulk DNA samples, were sequenced from 3 neurologically normal individuals to measure somatic LINE-1 (L1Hs) insertion rates. An additional 8 single neurons, and bulk DNA samples, were sequenced at low-coverage to characterize whole genome amplification coverage.
   Cell Type:  notcancer-neuron
   Median Sequencing Depth:  0.334905
   Publication:  Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
   DOI:  10.1016/j.cell.2012.09.035

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  24
   Number of runs:  24
   Number of single cell runs:  23
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP014781SAMN01092383SRR5367411.3173306150ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536741/SRR536741.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536741
2SRP014781SAMN01092384SRR5367420.2884708460ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536742/SRR536742.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536742
3SRP014781SAMN01092385SRR5367430.2931913420ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536743/SRR536743.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536743
4SRP014781SAMN01092386SRR5367440.3367498630ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536744/SRR536744.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536744
5SRP014781SAMN01092387SRR5367450.2865501830ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536745/SRR536745.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536745
6SRP014781SAMN01092388SRR5367460.2925665250ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536746/SRR536746.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536746
7SRP014781SAMN01092389SRR5367470.2640976260ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536747/SRR536747.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536747
8SRP014781SAMN01092390SRR5367480.2649085360ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536748/SRR536748.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536748
9SRP014781SAMN01092391SRR5367490.3658335210ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536749/SRR536749.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536749
10SRP014781SAMN01092392SRR5367500.3838796100ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536750/SRR536750.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536750
11SRP014781SAMN01092393SRR5367510.3653952070ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536751/SRR536751.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536751
12SRP014781SAMN01092394SRR5367520.3526309490ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536752/SRR536752.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536752
13SRP014781SAMN01092395SRR5367530.3496840840ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536753/SRR536753.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536753
14SRP014781SAMN01092396SRR5367540.3330597690ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536754/SRR536754.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536754
15SRP014781SAMN01092397SRR5367550.3585666460ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536755/SRR536755.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536755
16SRP014781SAMN01092398SRR5367560.3125973370ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536756/SRR536756.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536756
17SRP014781SAMN01092399SRR5367570.3194346930ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536757/SRR536757.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536757
18SRP014781SAMN01092400SRR5367580.3833632380ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536758/SRR536758.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536758
19SRP014781SAMN01092401SRR5367590.3551737370ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536759/SRR536759.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536759
20SRP014781SAMN01092402SRR5367600.3694667680ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536760/SRR536760.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536760
21SRP014781SAMN01092403SRR5367610.3245025260ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536761/SRR536761.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536761
22SRP014781SAMN01092404SRR5367620.3220937770ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536762/SRR536762.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536762
23SRP014781SAMN01096609SRR5367630.3491875840ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536763/SRR536763.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536763
24SRP014781SAMN01096610SRR5367640.3229383440ftp.sra.ebi.ac.uk/vol1/fastq/SRR536/SRR536764/SRR536764.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR536/SRR536764



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