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   Project:  SRP320769
   Organism:  Homo sapiens
   Study Title:  Single-cell analysis of somatic mutation burden in mammary cells of patho
   Center Name:  ALBERT EINSTEIN COLLEGE OF MEDICINE, INC
   Description:  It remains unknown if inherited germline mutations in the BRCA1 or BRCA2 gene increase the risk of breast and ovarian cancer by elevating mutation rate in mammary cells. Here we show, using a single-cell whole genome sequencing approach, that mammary luminal epithelial cells isolated from tissues obtained from preventive mastectomy surgeries in women with a pathogenic BRCA1/2 germline mutation, exhibit a statistically significant, increased mutation frequency as compared to age-matched controls without genetic risk of breast cancer.
   Cell Type:  notcancer-mammary epithelial
   Median Sequencing Depth:  0.000000
   Publication:  Single-cell analysis of somatic mutation burden in mammary epithelial cells of pathogenic?BRCA1/2?mutation carriers
   DOI:  10.1172/JCI148113

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  88
   Number of runs:  88
   Number of single cell runs:  72
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
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SRA Files
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1SRP320769SAMN19241805SRR146107960.0000000000
2SRP320769SAMN19241773SRR146107970.0000000000
3SRP320769SAMN19241756SRR146107980.0000000000
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87SRP320769SAMN19241782SRR146108820.0000000000
88SRP320769SAMN19241776SRR146108830.0000000000



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