SRP058890

See detailed project information

   Project:  SRP058890
   Organism:  Homo sapiens
   Study Title:  Homo sapiens
   Center Name:  UT MD Anderson Cancer Center
   Description:  Using this cell line to validate our developed sequencing method
   Cell Type:  Breast cancer
   Median Sequencing Depth:  0.240444
   Publication:  Highly multiplexed targeted DNA sequencing from single nuclei
   DOI:  10.1038/nprot.2016.005

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  1
   Number of runs:  48
   Number of single cell runs:  48
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP058890SAMN04347382SRR20464050.1806321970ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046405/SRR2046405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046405/SRR2046405_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046405
2SRP058890SAMN04347382SRR20464070.3175267190ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046407/SRR2046407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046407/SRR2046407_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/007/SRR2046407
3SRP058890SAMN04347382SRR20464130.1781237980ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046413/SRR2046413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046413/SRR2046413_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/003/SRR2046413
4SRP058890SAMN04347382SRR20464140.2066806450ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046414/SRR2046414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046414/SRR2046414_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046414
5SRP058890SAMN04347382SRR20464150.2403572120ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046415/SRR2046415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046415/SRR2046415_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046415
6SRP058890SAMN04347382SRR20464220.2371910530ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046422/SRR2046422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046422/SRR2046422_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046422
7SRP058890SAMN04347382SRR20464240.2172059650ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046424/SRR2046424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046424/SRR2046424_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046424
8SRP058890SAMN04347382SRR20464280.2553069990ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046428/SRR2046428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046428/SRR2046428_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/008/SRR2046428
9SRP058890SAMN04347382SRR20464320.1961183810ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046432/SRR2046432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046432/SRR2046432_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046432
10SRP058890SAMN04347382SRR20464340.2108415700ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046434/SRR2046434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046434/SRR2046434_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046434
11SRP058890SAMN04347382SRR20464360.2903347530ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046436/SRR2046436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046436/SRR2046436_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/006/SRR2046436
12SRP058890SAMN04347382SRR20464380.1467240410ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046438/SRR2046438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046438/SRR2046438_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/008/SRR2046438
13SRP058890SAMN04347382SRR20464400.2818059650ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046440/SRR2046440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046440/SRR2046440_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/000/SRR2046440
14SRP058890SAMN04347382SRR20464420.2615125990ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046442/SRR2046442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046442/SRR2046442_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046442
15SRP058890SAMN04347382SRR20464470.2581351800ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046447/SRR2046447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046447/SRR2046447_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/007/SRR2046447
16SRP058890SAMN04347382SRR20464500.2465323800ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046450/SRR2046450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046450/SRR2046450_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/000/SRR2046450
17SRP058890SAMN04347382SRR20464530.1633231890ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046453/SRR2046453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046453/SRR2046453_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/003/SRR2046453
18SRP058890SAMN04347382SRR20464540.1758002430ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046454/SRR2046454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046454/SRR2046454_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046454
19SRP058890SAMN04347382SRR20464550.2911550820ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046455/SRR2046455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046455/SRR2046455_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046455
20SRP058890SAMN04347382SRR20464560.1827998780ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046456/SRR2046456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046456/SRR2046456_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/006/SRR2046456
21SRP058890SAMN04347382SRR20464680.2205533780ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046468/SRR2046468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046468/SRR2046468_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/008/SRR2046468
22SRP058890SAMN04347382SRR20464810.1514662200ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046481/SRR2046481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046481/SRR2046481_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/001/SRR2046481
23SRP058890SAMN04347382SRR20464820.2413798540ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046482/SRR2046482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046482/SRR2046482_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046482
24SRP058890SAMN04347382SRR20464830.2230934270ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046483/SRR2046483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046483/SRR2046483_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/003/SRR2046483
25SRP058890SAMN04347382SRR20464840.4089280580ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046484/SRR2046484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046484/SRR2046484_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046484
26SRP058890SAMN04347382SRR20464850.2400289710ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046485/SRR2046485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046485/SRR2046485_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046485
27SRP058890SAMN04347382SRR20464861.2751029820ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046486/SRR2046486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046486/SRR2046486_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/006/SRR2046486
28SRP058890SAMN04347382SRR20464870.2590764460ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046487/SRR2046487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046487/SRR2046487_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/007/SRR2046487
29SRP058890SAMN04347382SRR20464880.2614682900ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046488/SRR2046488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046488/SRR2046488_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/008/SRR2046488
30SRP058890SAMN04347382SRR20464890.3074667070ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046489/SRR2046489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046489/SRR2046489_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/009/SRR2046489
31SRP058890SAMN04347382SRR20464900.2905821060ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046490/SRR2046490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046490/SRR2046490_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/000/SRR2046490
32SRP058890SAMN04347382SRR20464910.4021560560ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046491/SRR2046491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046491/SRR2046491_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/001/SRR2046491
33SRP058890SAMN04347382SRR20464920.2405311630ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046492/SRR2046492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046492/SRR2046492_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046492
34SRP058890SAMN04347382SRR20465340.2975558130ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046534/SRR2046534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046534/SRR2046534_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046534
35SRP058890SAMN04347382SRR20465350.3731380400ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046535/SRR2046535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046535/SRR2046535_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046535
36SRP058890SAMN04347382SRR20465360.3142816800ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046536/SRR2046536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046536/SRR2046536_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/006/SRR2046536
37SRP058890SAMN04347382SRR20465370.1619318320ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046537/SRR2046537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046537/SRR2046537_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/007/SRR2046537
38SRP058890SAMN04347382SRR20465380.1802899570ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046538/SRR2046538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/008/SRR2046538/SRR2046538_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/008/SRR2046538
39SRP058890SAMN04347382SRR20465390.3112763850ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046539/SRR2046539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046539/SRR2046539_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/009/SRR2046539
40SRP058890SAMN04347382SRR20465400.1902414490ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046540/SRR2046540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/000/SRR2046540/SRR2046540_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/000/SRR2046540
41SRP058890SAMN04347382SRR20465410.0000053600ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046541/SRR2046541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/001/SRR2046541/SRR2046541_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/001/SRR2046541
42SRP058890SAMN04347382SRR20465420.2355135730ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046542/SRR2046542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/002/SRR2046542/SRR2046542_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/002/SRR2046542
43SRP058890SAMN04347382SRR20465430.3084276320ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046543/SRR2046543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/003/SRR2046543/SRR2046543_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/003/SRR2046543
44SRP058890SAMN04347382SRR20465440.2099781500ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046544/SRR2046544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/004/SRR2046544/SRR2046544_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/004/SRR2046544
45SRP058890SAMN04347382SRR20465450.2340483870ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046545/SRR2046545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2046545/SRR2046545_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2046545
46SRP058890SAMN04347382SRR20465460.2433360930ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046546/SRR2046546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/006/SRR2046546/SRR2046546_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/006/SRR2046546
47SRP058890SAMN04347382SRR20465470.2934972000ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046547/SRR2046547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/007/SRR2046547/SRR2046547_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/007/SRR2046547
48SRP058890SAMN04347382SRR20465490.2180956790ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046549/SRR2046549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/009/SRR2046549/SRR2046549_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR204/009/SRR2046549



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