NotCancer

Project list (click to check detailed information)

IDProject AccessionOrganismStudy TitleCenter NameCancer TypeAmplification Method
1SRP014781Homo sapiensSingle Neuron Sequencing Quantifies L1 Retrotransposition and Somatic Mutation in the Human BrainBoston Children's Hospitalnotcancer-neuronMDA
2SRP052954Homo sapiensWhole-genome sequencing of RPE-1 cells with induced micronucleiDana-Farber Cancer Institutenotcancer-retinal pigment epithelial cellsMDA
3SRP017516Homo sapiensHomo sapiens strain:HuRef Genome sequencingJCVInotcancer-germ-spermMDA
4SRP013494Homo sapiensSingle sperm whole genome sequencingStanford Universitynotcancer-germ-spermMDA
5SRP026609Homo sapiensSingle Human Oocyte Genome sequencingBiodynamic Optical Imaging Center, PKUnotcancer-germ-oocytesMALBAC
6SRP030642Homo sapiensSingle Neuron and Fibroblast SequencingUniversity of Virginianotcancer-neuron and fibroblastDOP-PCR,MDA
7SRP051114Homo sapiensHomo sapiens Genome sequencingBoston Childrens Hospitalnotcancer-neuron and lymphoblastDOP-PCR,MDA
8SRP016866Homo sapiensSingle cells Genome Sequencing-1BGI-Shenzhennotcancer-blood or embryosDOP-PCR
9SRP041470Homo sapiensSingle-neuron whole-genome analysis of spatial patterns of somatic mutation in the human brainBoston Children's Hospitalnotcancer-neuronMDA
10SRP061939Homo sapiensHomo sapiens Genome sequencing and assemblyChildren's Hospital Boston / Harvard Medical Schoolnotcancer-neuronMDA
11SRP041670Homo sapiensMus musculus and Homo sapiens Single Cell SequencingMassachusetts Institute of Technologynotcancer-fibroblast neuron and liverDOP-PCR
12SRP067062Homo sapiensSingle cell sequencing of human dermal fibroblastAlbert Einstein College of Medicinenotcancer-dermal fibroblastSCMDA,MDA
13SRP106579Homo sapiensSingle-stranded Sequencing using microfluidic reactors (SISSOR)Univ. of California San Diegonotcancer-skin fibroblastMDA
14SRP102259Homo sapiensSingle-Cell Whole Genome Analyses by Linear Amplification via Transposon Insertion (LIANTI)Harvard Universitynotcancer-fibroblastLIANTI,MDA,MALBAC,DOP-PCR
15SRP178894Homo sapiensSingle cell whole genome sequencing using primary template amplification (PTA)St. Jude Children's Research Hospitalnotcancer-lymphoblastoid and cord bloodPTA,SCMDA
16SRP194057Homo sapiensAccurate SNV detection in single cells by META-CSHarvard Universitynotcancer-germ-eHAP and spermMETA-CS
17SRP219003Homo sapiensLandscape of Somatic Mutations in B Lymphocytes Across Human LifespanAlbert Einstein College of Medicinenotcancer-B lymphocytesMDA
18SRP017186Homo sapiensHuman Sperm Genome SequencingHarvard Universitynotcancer-germ-spermMALBAC
19SRP081010Homo sapiensHuman, Mouse, Rhesus Raw sequence readsOregon Health & Science Universitynotcancer-lymphoblastoidDOP-PCR
20SRP224945Homo sapiensSingle-cell DNA replication sequencing (scRepli-seq): a method for mapping replication timing domains genome wide in single mammalian cellsGraduate School of Medicine, Mie Universitynotcancer-epithelial cellsDOP-PCR
21SRP398595Homo sapienscbNIPT sequencing dataZhejiang Universitynotcancer-blood or saliva or amnioticfluidDOP-PCR
22SRP461548Homo sapiensAccessible high-throughput single-cell whole genome sequencing with paired chromatin accessibilityAdey Lab, MMG, Oregon Health & Science Universitynotcancer-lymphocytesscATAC-seq
23SRP345275Homo sapiensMaintenance of Genome Sequence Integrity in Long -and Short-lived Rodent SpeciesALBERT EINSTEIN COLLEGE OF MEDICINE, INCnotcancer-primary lung fibroblastsSCMDA
24SRP366675Homo sapiensSingle-cell analysis of Somatic Mutations in Human Bronchial Epithelial Cells in Relation to Aging and SmokingALBERT EINSTEIN COLLEGE OF MEDICINE, INCnotcancer-lungMDA
25SRP091915Homo sapiensGenome-wide chromosome conformation during early human cortical developmentUNIVERSITY OF CALIFORNIA LOS ANGELESnotcancer-liverMDA
26SRP320769Homo sapiensSingle-cell analysis of somatic mutation burden in mammary cells of pathoALBERT EINSTEIN COLLEGE OF MEDICINE, INCnotcancer-mammary epithelial SCMDA
27ERP024468Homo sapiensComparison of seven single cell Whole Genome Amplification commercial kits using targeted sequencingEuropean Bioinformatics Institute;Department of Computer Science and Applied Mathematics;Weizmann Institute of Sciencenotcancer-embryonic stem and epithelial LA-PCR,MALBAC,DOP-PCR,MDA
28ERP137498Homo sapiensWhole Genome Amplification surveying yield, reproducibility and heterozygous balance, reported by MIPs targeting STRsEuropean Bioinformatics Institute;WISnotcancer-embryonic stem MALBAC,DOP-PCR,MDA
29SRP341378Homo sapiensSingle-cell sequencing of human cell linesCornell Universitynotcancer-lymphoblastoid and embryonic stem and Tumor-derivedMDA,DLP+
30SRP126192Homo sapiensCell Identity Determination In Human Brain: Somatic mutation and cell lineageCHILDREN'S HOSPITALnotcancer-neuronPTA

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